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produce_offspring

 produce_offspring (key:<function PRNGKey>, state:chewc.state.SimState,
                    sp:chewc.structs.SimParam,
                    config:chewc.config.SimConfig,
                    mother_indices:jax.Array, father_indices:jax.Array)

*Top-level kernel to produce a cohort of offspring from selected parents.

This function is designed to be the main entry point for meiosis in your simulation step. It is JIT-compatible and vmapped across crosses.*

	Type	Details
key	PRNGKey
state	SimState
sp	SimParam
config	SimConfig
mother_indices	Array	(n_crosses,)
father_indices	Array	(n_crosses,)
Returns	Tuple

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meiosis_for_one_cross

 meiosis_for_one_cross (key:<function PRNGKey>, mother_geno:jax.Array,
                        father_geno:jax.Array, mother_ibd:jax.Array,
                        father_ibd:jax.Array, n_chr:int,
                        gen_map:jax.Array, v_interference:float,
                        max_crossovers:int)

Creates a single diploid progeny’s geno and IBD from two parents. This function is vmapped across chromosomes for parallel execution.

	Type	Details
key	PRNGKey
mother_geno	Array	Shape: (n_chr, ploidy, n_loci)
father_geno	Array	Shape: (n_chr, ploidy, n_loci)
mother_ibd	Array
father_ibd	Array
n_chr	int
gen_map	Array	Shape: (n_chr, n_loci)
v_interference	float
max_crossovers	int
Returns	Tuple