core

Fill in a module description here

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source

set_pheno

 set_pheno (key:<function PRNGKey>, pop:chewc.population.Population,
            traits:chewc.trait.TraitCollection, ploidy:int,
            h2:jaxtyping.Float[Array,'nTraits'],
            cor_e:Optional[jaxtyping.Float[Array,'nTraitsnTraits']]=None)

*Sets phenotypes for a population based on its genetic values and a specified heritability. This is a high-performance, JIT-compiled function.

— JAX Implementation Notes —

This function serves as a JIT-compatible wrapper for the core logic in _set_pheno_internal. The ploidy argument, being a standard Python integer that influences array shapes, must be treated as a “static” argument for the JIT compiler.

We achieve this using functools.partial. A new function is created on-the-fly where ploidy is a fixed, “baked-in” value. This new function, which only contains JAX-traceable arguments, is then JIT-compiled and executed. This pattern ensures that JAX does not need to re-compile the function unless the value of ploidy changes.*